D for the p300 TAZ2 domain. This is characterised by two

D for the p300 TAZ2 domain. This is characterised by two large negative peaks at approximately 208 and 222 nm, which indicate a predominantly helical structure. Previous work has shown that the equivalent region of the very closely related TAZ2 domain of CBP contains five helices, with the tertiary structure of the domain stabilised by the coordination of three zinc ions [30]. To assess the importance of Zn2+ binding for p300 TAZ2, samples were Finafloxacin web incubated with EDTA and analysed by CD (figure 2C (ii)), which resulted in a far-UV spectrum purchase 80-49-9 typical of a random coil polypeptide. This clearly indicates that the p300 TAZ2 domain also requires Zn2+ ions to adopt a stable folded structure. Similar results were recently published for a non-native construct of human p300 TAZ2 (residues 1723?812) in which the non-zinc coordinating cysteines had been mutated to alanine residues [47]. 15 N/1H HSQC spectra obtained from uniformly 15N labelled samples of p300 TAZ2 show many well dispersed peaks, indicative of the majority of residues forming a folded globular domain. Analysis of a series of triple-resonance NMR spectra acquired from samples of p300 TAZ2 allowed essentially complete backbone resonance assignments (N, NH, Ca, Cb and CO) to be made for p300 TAZ2. The structural implications of this information were assessed using the programs CSI and TALOS, which resulted in the identification of four helical regions in p300 TAZ2 comprising residues Asp1729-Ala1745 (a1), Ser1757-Gly1770 (a2), Lys1772-Asn1776 (a29) and Ile1781-Ala1793 (a3). TALOS identified the helical regions to comprise residues Gly1728Gln1747 (a1), Pro1756-Gly1770 (a2), Arg1773-Asn1776 (a29) and Ile1781-Lys1794 (a3). To date no chemical shift assignments have been reported for the isolated p300 TAZ2 domain, however, with the exception of the regions located near the N- and C-termini, the chemical shifts of p300 TAZ2 are very similar to those previously determined for CBP TAZ2 (figure 3A, [30]), suggesting that the domains will adopt very similar secondary and tertiary structures. Importantly, virtually identical Cb chemical shifts were observed for the eleven of thirteen cysteine residues that we were able to obtain assignments for (average difference 0.0960.08 ppm). The Cb chemical shift can be used to confirm whether cysteine residues are coordinating a zinc ion, as this results in a significant downfieldshift [30], [48]. Unfortunately, due to the absence of histidine ring assignments we were unable to confirm the identity of the three zinc-coordinating histidine residues, however, given the close similarity of the cysteine Cb chemical shifts it is very likely that our construct contains three correctly coordinated zinc ions.B-Myb TAD-p300 TAZ2 Complex FormationPull-down assays using GST-tagged B-Myb TAD as bait were used to probe potential interactions between the B-Myb TAD and p300 TAZ2. The SDS-PAGE gel shown in figure 4A illustrates the results of a typical pull-down assay conducted at a 1:1 molar ratio of GST-B-Myb TAD:p300 TAZ2, which demonstrates that the p300 TAZ2 domain binds to the immobilized GST-B-Myb fusion protein. In control experiments where an equivalent amount of p300 TAZ2 was loaded in the presence of GST alone the majority of the protein came through the column in wash fractions, however some p300 TAZ2 protein did bind to the column, as shown in figure 4B. Semi-quantitative analysis of the staining intensities observed for the p300 TAZ2 loaded compared to the protei.D for the p300 TAZ2 domain. This is characterised by two large negative peaks at approximately 208 and 222 nm, which indicate a predominantly helical structure. Previous work has shown that the equivalent region of the very closely related TAZ2 domain of CBP contains five helices, with the tertiary structure of the domain stabilised by the coordination of three zinc ions [30]. To assess the importance of Zn2+ binding for p300 TAZ2, samples were incubated with EDTA and analysed by CD (figure 2C (ii)), which resulted in a far-UV spectrum typical of a random coil polypeptide. This clearly indicates that the p300 TAZ2 domain also requires Zn2+ ions to adopt a stable folded structure. Similar results were recently published for a non-native construct of human p300 TAZ2 (residues 1723?812) in which the non-zinc coordinating cysteines had been mutated to alanine residues [47]. 15 N/1H HSQC spectra obtained from uniformly 15N labelled samples of p300 TAZ2 show many well dispersed peaks, indicative of the majority of residues forming a folded globular domain. Analysis of a series of triple-resonance NMR spectra acquired from samples of p300 TAZ2 allowed essentially complete backbone resonance assignments (N, NH, Ca, Cb and CO) to be made for p300 TAZ2. The structural implications of this information were assessed using the programs CSI and TALOS, which resulted in the identification of four helical regions in p300 TAZ2 comprising residues Asp1729-Ala1745 (a1), Ser1757-Gly1770 (a2), Lys1772-Asn1776 (a29) and Ile1781-Ala1793 (a3). TALOS identified the helical regions to comprise residues Gly1728Gln1747 (a1), Pro1756-Gly1770 (a2), Arg1773-Asn1776 (a29) and Ile1781-Lys1794 (a3). To date no chemical shift assignments have been reported for the isolated p300 TAZ2 domain, however, with the exception of the regions located near the N- and C-termini, the chemical shifts of p300 TAZ2 are very similar to those previously determined for CBP TAZ2 (figure 3A, [30]), suggesting that the domains will adopt very similar secondary and tertiary structures. Importantly, virtually identical Cb chemical shifts were observed for the eleven of thirteen cysteine residues that we were able to obtain assignments for (average difference 0.0960.08 ppm). The Cb chemical shift can be used to confirm whether cysteine residues are coordinating a zinc ion, as this results in a significant downfieldshift [30], [48]. Unfortunately, due to the absence of histidine ring assignments we were unable to confirm the identity of the three zinc-coordinating histidine residues, however, given the close similarity of the cysteine Cb chemical shifts it is very likely that our construct contains three correctly coordinated zinc ions.B-Myb TAD-p300 TAZ2 Complex FormationPull-down assays using GST-tagged B-Myb TAD as bait were used to probe potential interactions between the B-Myb TAD and p300 TAZ2. The SDS-PAGE gel shown in figure 4A illustrates the results of a typical pull-down assay conducted at a 1:1 molar ratio of GST-B-Myb TAD:p300 TAZ2, which demonstrates that the p300 TAZ2 domain binds to the immobilized GST-B-Myb fusion protein. In control experiments where an equivalent amount of p300 TAZ2 was loaded in the presence of GST alone the majority of the protein came through the column in wash fractions, however some p300 TAZ2 protein did bind to the column, as shown in figure 4B. Semi-quantitative analysis of the staining intensities observed for the p300 TAZ2 loaded compared to the protei.

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